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There are DokuWiki plugins for research & education which I developed. All plugins are under GPL2 license, so feel free to use them in your DokuWiki.
Dokuwiki Official
DokuWiki plugins for bioscience and biotechnology.
This is a plugin for DokuWiki that retrieves the information from PubMed widh PMID. The plugin stores NCBI ESummary XML file in /data/media/ncbi_esummary directory.
{{pubmed>[Command]:[PubMed ID]}}
Command | item | function |
---|---|---|
short | link | Show a short pubmed link from NCBI Structure database |
long | link | Show a detailed pubmed link from NCBI Structure database |
summaryXML | xml | Show a XML summary data from the NCBI database using Entrez Utilities |
clear_summary | - | Clear cached XML files in /data/media/ncbi_esummary |
remove_dir | - | Clear cached files and remove cache directory |
{{pubmed>short:9039911}}
{{pubmed>long:9039911}}
{{pubmed>summaryXML:9039911}}
<?xml version="1.0" encoding="UTF-8" ?> <!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD esummary v1 20041029//EN" "https://eutils.ncbi.nlm.nih.gov/eutils/dtd/20041029/esummary-v1.dtd"> <eSummaryResult> <DocSum> <Id>9039911</Id> <Item Name="PubDate" Type="Date">1997 Feb 27</Item> <Item Name="EPubDate" Type="Date"></Item> <Item Name="Source" Type="String">Nature</Item> <Item Name="AuthorList" Type="List"> <Item Name="Author" Type="String">Wilmut I</Item> <Item Name="Author" Type="String">Schnieke AE</Item> <Item Name="Author" Type="String">McWhir J</Item> <Item Name="Author" Type="String">Kind AJ</Item> <Item Name="Author" Type="String">Campbell KH</Item> </Item> <Item Name="LastAuthor" Type="String">Campbell KH</Item> <Item Name="Title" Type="String">Viable offspring derived from fetal and adult mammalian cells.</Item> <Item Name="Volume" Type="String">385</Item> <Item Name="Issue" Type="String">6619</Item> <Item Name="Pages" Type="String">810-3</Item> <Item Name="LangList" Type="List"> <Item Name="Lang" Type="String">English</Item> </Item> <Item Name="NlmUniqueID" Type="String">0410462</Item> <Item Name="ISSN" Type="String">0028-0836</Item> <Item Name="ESSN" Type="String">1476-4687</Item> <Item Name="PubTypeList" Type="List"> <Item Name="PubType" Type="String">Journal Article</Item> </Item> <Item Name="RecordStatus" Type="String">PubMed - indexed for MEDLINE</Item> <Item Name="PubStatus" Type="String">ppublish</Item> <Item Name="ArticleIds" Type="List"> <Item Name="pubmed" Type="String">9039911</Item> <Item Name="doi" Type="String">10.1038/385810a0</Item> <Item Name="eid" Type="String">9039911</Item> <Item Name="rid" Type="String">9039911</Item> </Item> <Item Name="DOI" Type="String">10.1038/385810a0</Item> <Item Name="History" Type="List"> <Item Name="pubmed" Type="Date">1997/02/27 00:00</Item> <Item Name="medline" Type="Date">1997/02/27 00:01</Item> <Item Name="entrez" Type="Date">1997/02/27 00:00</Item> </Item> <Item Name="References" Type="List"> <Item Name="Comment in" Type="String">Nature. 1997 Mar 13;386(6621):119. PMID: 9062180</Item> <Item Name="Comment in" Type="String">Nature. 1997 Apr 3;386(6624):431. PMID: 9087390</Item> <Item Name="Comment in" Type="String">Nature. 2006 Apr 27;440(7088):1112. PMID: 16641972</Item> <Item Name="Comment in" Type="String">Nature. 1997 Jun 19;387(6635):754. PMID: 9194550</Item> <Item Name="Comment in" Type="String">Nature. 1997 Feb 27;385(6619):753. PMID: 9039891</Item> <Item Name="Comment in" Type="String">Nature. 1997 Mar 6;386(6620):12. PMID: 9052771</Item> <Item Name="Comment in" Type="String">Nature. 1997 Apr 3;386(6624):431. PMID: 9087392</Item> <Item Name="Erratum in" Type="String">Nature 1997 Mar 13;386(6621):200</Item> </Item> <Item Name="HasAbstract" Type="Integer">1</Item> <Item Name="PmcRefCount" Type="Integer">460</Item> <Item Name="FullJournalName" Type="String">Nature</Item> <Item Name="ELocationID" Type="String"></Item> <Item Name="SO" Type="String">1997 Feb 27;385(6619):810-3</Item> </DocSum> </eSummaryResult>
When you want to create a link, use [[pubmed>9039911]]. → 9039911
Recent version of DokuWiki has Extention manager that can download and install plugin automatically. Use the manager.