There are DokuWiki plugins for research & education which I developed. All plugins are under GPL2 license, so feel free to use them in your DokuWiki.
Dokuwiki Official
DokuWiki plugins for bioscience and biotechnology.
This is a beta version.
Testing of this plugin will be appreciated.
This dokuwiki plugin displays a formatted chemical formula and calculates molecular weight of a chemical or an amino-acid sequence. This is an extended version of the chem plugin.
{{chem>([flags]:)[Chemicals or amino acids]}}
<float left> Wiki syntax
// Default {{chem>C2H3O2}} // Formatted formula {{chem>f:C2H3O2}} // Molecular weight (MW) {{chem>w:C2H3O2}} // Formatted formula and MW {{chem>fw:C2H3O2}} // - with charges {{chem>fw:CH3COO-Na+}} // - with a bracket {{chem>(C6H6)2}} // - with brackets {{chem>fw:((C6H6)2)5}} // MW of polypeptide chain {{chem>aaw:AlaAlaLysLys}} // Amino acid sequence (1-letter) and MW {{chem>aa1w:AlaAlaLysLys}} // Amino acid sequence (3-letter) and MW {{chem>aa3w:AlaAlaLysLys}} // All items with line-feeds {{chem>aa1fnw:AlaAlaLysLys}}
</float>
<float left>
Appearance
search?q=C2H3O2&btnI=lucky
search?q=f%3AC2H3O2&btnI=lucky
search?q=w%3AC2H3O2&btnI=lucky
search?q=fw%3AC2H3O2&btnI=lucky
search?q=fw%3ACH3COO-Na%2B&btnI=lucky
search?q=%28C6H6%292&btnI=lucky
search?q=fw%3A%28%28C6H6%292%295&btnI=lucky
search?q=aaw%3AAlaAlaLysLys&btnI=lucky
search?q=aa1w%3AAlaAlaLysLys&btnI=lucky
search?q=aa3w%3AAlaAlaLysLys&btnI=lucky
search?q=aa1fnw%3AAlaAlaLysLys&btnI=lucky
</float>
<clear/>
Flag | |
---|---|
f | Display a formatted chemical formula or an amino-acid sequence |
w | Calculate and display molecular weight |
aa | Calculate as an amino-acid sequence |
1 | Display amino-acid sequence with 1-letter A.A. |
3 | Display amino-acid sequence with 3-letters A.A. |
n | Use a new line as a splitter |