There are DokuWiki plugins for research & education which I developed. All plugins are under GPL2 license, so feel free to use them in your DokuWiki.
Dokuwiki Official
DokuWiki plugins for bioscience and biotechnology.
This is a beta version.
Testing of this plugin will be appreciated.
This dokuwiki plugin displays a formatted chemical formula and calculates molecular weight of a chemical or an amino-acid sequence. This is an extended version of the chem plugin.
{{chem>([flags]:)[Chemicals or amino acids]}}
<float left> Wiki syntax
// Default
{{chem>C2H3O2}}
// Formatted formula
{{chem>f:C2H3O2}}
// Molecular weight (MW)
{{chem>w:C2H3O2}}
// Formatted formula and MW
{{chem>fw:C2H3O2}}
// - with charges
{{chem>fw:CH3COO-Na+}}
// - with a bracket
{{chem>(C6H6)2}}
// - with brackets
{{chem>fw:((C6H6)2)5}}
// MW of polypeptide chain
{{chem>aaw:AlaAlaLysLys}}
// Amino acid sequence (1-letter) and MW
{{chem>aa1w:AlaAlaLysLys}}
// Amino acid sequence (3-letter) and MW
{{chem>aa3w:AlaAlaLysLys}}
// All items with line-feeds
{{chem>aa1fnw:AlaAlaLysLys}}
</float>
<float left>
Appearance
search?q=C2H3O2&btnI=lucky
search?q=f%3AC2H3O2&btnI=lucky
search?q=w%3AC2H3O2&btnI=lucky
search?q=fw%3AC2H3O2&btnI=lucky
search?q=fw%3ACH3COO-Na%2B&btnI=lucky
search?q=%28C6H6%292&btnI=lucky
search?q=fw%3A%28%28C6H6%292%295&btnI=lucky
search?q=aaw%3AAlaAlaLysLys&btnI=lucky
search?q=aa1w%3AAlaAlaLysLys&btnI=lucky
search?q=aa3w%3AAlaAlaLysLys&btnI=lucky
search?q=aa1fnw%3AAlaAlaLysLys&btnI=lucky
</float>
<clear/>
| Flag | |
|---|---|
| f | Display a formatted chemical formula or an amino-acid sequence |
| w | Calculate and display molecular weight |
| aa | Calculate as an amino-acid sequence |
| 1 | Display amino-acid sequence with 1-letter A.A. |
| 3 | Display amino-acid sequence with 3-letters A.A. |
| n | Use a new line as a splitter |